| Homogenizing Indonesian Islam: persecution of the Shia group in Yogyakarta A Makin Studia Islamika 24 (1), 1-32, 2017 | 67 | 2017 |
| Keragaman dan Perbedaan, Budaya dan Agama dalam Lintas Sejarah Manusia A Makin Suka Press, 2016 | 61 | 2016 |
| Challenging Islamic Orthodoxy Accounts of Lia Eden and Other Prophets in Indonesia A Makin Springer, 2016 | 55 | 2016 |
| Islamic acehnese identity, Sharia, and christianization rumor: A study of the narratives of the attack on the bethel church in Penauyong Banda Aceh A Makin Journal of Indonesian Islam 10 (1), 1-36, 2016 | 53 | 2016 |
| ‘Not a Religious State’ A study of three Indonesian religious leaders on the relation of state and religion A Makin Indonesia and the Malay World 46 (135), 95-116, 2018 | 49 | 2018 |
| Unearthing Nusantara’s Concept of Religious Pluralism: Harmonization and Syncretism in Hindu-Buddhist and Islamic Classical Texts A Makin Al-Jami'ah Journal of Islamic Studies 54 (1), 1-30, 2016 | 45 | 2016 |
| Antara Barat dan Timur: Batasan, Dominasi, Relasi, dan Globalisasi. A Makin Serambi, 2015 | 36 | 2015 |
| Representing the enemy: Musaylima in Muslim literature A Makin Europäische Hochschulschriften/27, 2010 | 22 | 2010 |
| Benedict XVI and Islam: Indonesian public reactions to the Regensburg Address A Makin Islam and Christian–Muslim Relations 20 (4), 409-421, 2009 | 21 | 2009 |
| Nabi-Nabi Nusantara: Kisah Lia Eden dan Lainnya A Makin Suka Press, 2017 | 20 | 2017 |
| Revisiting Indonesian public reactions against Danish cartoons depicting prophet Muhammad A Makin Indonesian Journal of Islam and Muslim Societies 5 (2), 195-229, 2015 | 20 | 2015 |
| Returning to the Religion of Abraham: Controversies over the Gafatar Movement in Contemporary Indonesia A Makin Islam and Christian–Muslim Relations 30 (1), 87-104, 2019 | 13 | 2019 |
| Pluralism versus Islamic Orthodoxy, The Indonesian public debate over the case of Lia Aminuddin, the founder of Salamullah religious cult A Makin Journal of the International Yale Indonesia Forum, 2011 | 12 | 2011 |
| Identitas Keacehan Dalam Isu-Isu Syariatisasi, Kristenisasi, Aliran Sesat dan Hegemoni Barat A Makin Islamica: Jurnal Studi Keislaman 11 (1), 113-134, 2016 | 11 | 2016 |
| Are there any Indonesian philosophers? Dealing with a common question and possible answers A Makin Ulumuna. Journal of Islamic Studies 20 (1), 1-28, 2016 | 9 | 2016 |
| Anti-Kesempurnaan, Membaca, Melihat dan Bertutur tentang Islam A Makin Pustaka Pelajar, 2002 | 9 | 2002 |
| A PRELIMINARY SURVEY ON ISLAMIC MYSTICISM IN JAVA S Sartini, HSA Putra Analisis: Jurnal Studi Keislaman 16 (2), 1-40, 2017 | 8* | 2017 |
| Homogenizing Indonesian Islam: Persecution of the Shia Group in Yogyakarta. Studia Islamika, 24 (1), 1–32 A Makin Doi, 2017 | 8 | 2017 |
| Pluralism in education, a study of Mukti Ali’s thought A Makin Education in Indonesia perspectives, politics and practices, 2012 | 8 | 2012 |
| Plurality, Religiosity, Patriotism: Critical Insights into Indonesia and Islam A Makin Suka Press, 2017 | 7 | 2017 |
