| DendroPy: a Python library for phylogenetic computing J Sukumaran, MT Holder Bioinformatics 26 (12), 1569-1571, 2010 | 1744 | 2010 |
| Multispecies coalescent delimits structure, not species J Sukumaran, LL Knowles Proceedings of the National Academy of Sciences 114 (7), 1607-1612, 2017 | 828 | 2017 |
| Evolutionary and biogeographic origins of high tropical diversity in Old World frogs (Ranidae) JJ Wiens, J Sukumaran, RA Pyron, RM Brown Evolution 63 (5), 1217-1231, 2009 | 240 | 2009 |
| Open season: An analysis of the pet trade in Medan, Sumatra 1997-2001 CR Shepherd, J Sukumaran, SA Wich < bound method Organization. get_name_with_acronym of< Organization …, 2004 | 136 | 2004 |
| NeXML: rich, extensible, and verifiable representation of comparative data and metadata RA Vos, JP Balhoff, JA Caravas, MT Holder, H Lapp, WP Maddison, ... Systematic biology 61 (4), 675-689, 2012 | 114 | 2012 |
| Phylogeography and historical demography of Polypedates leucomystax in the islands of Indonesia and the Philippines: Evidence for recent human-mediated range expansion? RM Brown, CW Linkem, CD Siler, J Sukumaran, JA Esselstyn, ... Molecular Phylogenetics and Evolution 57 (2), 598-619, 2010 | 102 | 2010 |
| A justification for reporting the majority-rule consensus tree in Bayesian phylogenetics MT Holder, J Sukumaran, PO Lewis Systematic biology 57 (5), 814-821, 2008 | 100 | 2008 |
| Dominant climate influences on North American bird distributions A Jiménez‐Valverde, N Barve, A Lira‐Noriega, SP Maher, Y Nakazawa, ... Global Ecology and Biogeography 20 (1), 114-118, 2011 | 93 | 2011 |
| Incorporating the speciation process into species delimitation J Sukumaran, MT Holder, LL Knowles PLoS Computational Biology 17 (5), e1008924, 2021 | 83 | 2021 |
| Evidence for climate-driven diversification? A caution for interpreting ABC inferences of simultaneous historical events JR Oaks, J Sukumaran, JA Esselstyn, CW Linkem, CD Siler, MT Holder, ... Evolution 67 (4), 991-1010, 2013 | 79 | 2013 |
| Phylogenetic relationships of Ansonia from Southeast Asia inferred from mitochondrial DNA sequences: Systematic and biogeographic implications (Anura: Bufonidae) M Matsui, A Tominaga, W Liu, W Khonsue, LL Grismer, AC Diesmos, ... Molecular Phylogenetics and Evolution 54 (2), 561-570, 2010 | 64 | 2010 |
| Neutral models of microbiome evolution Q Zeng, J Sukumaran, S Wu, A Rodrigo PLoS computational biology 11 (7), e1004365, 2015 | 62 | 2015 |
| Models of microbiome evolution incorporating host and microbial selection Q Zeng, S Wu, J Sukumaran, A Rodrigo Microbiome 5, 1-16, 2017 | 58 | 2017 |
| SumTrees: phylogenetic tree summarization. 4.0. 0 J Sukumaran, MT Holder Progr. Doc. available from authors, 2015 | 57 | 2015 |
| Machine learning biogeographic processes from biotic patterns: a new trait-dependent dispersal and diversification model with model choice by simulation-trained discriminant … J Sukumaran, EP Economo, L Lacey Knowles Systematic Biology 65 (3), 525-545, 2016 | 49 | 2016 |
| Phylotastic! Making tree-of-life knowledge accessible, reusable and convenient A Stoltzfus, H Lapp, N Matasci, H Deus, B Sidlauskas, CM Zmasek, ... BMC bioinformatics 14, 1-17, 2013 | 48 | 2013 |
| Trait-dependent biogeography:(re) integrating biology into probabilistic historical biogeographical models J Sukumaran, LL Knowles Trends in Ecology & Evolution 33 (6), 390-398, 2018 | 47 | 2018 |
| Microevolutionary processes impact macroevolutionary patterns J Li, JP Huang, J Sukumaran, LL Knowles BMC evolutionary biology 18, 1-8, 2018 | 43 | 2018 |
| A matter of phylogenetic scale: distinguishing incomplete lineage sorting from lateral gene transfer as the cause of gene tree discord in recent versus deep diversification … LL Knowles, H Huang, J Sukumaran, SA Smith American journal of botany 105 (3), 376-384, 2018 | 38 | 2018 |
| A new species of Microhyla (Anura: Microhylidae) from the Malay Peninsula I Das, N Yaakob, J Sukumaran HAMADRYAD-MADRAS- 31 (2), 304, 2007 | 36 | 2007 |
