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Harriet Alexander
Harriet Alexander
Verified email at whoi.edu - Homepage
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Cited by
Cited by
Year
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ...
Nature biotechnology 37 (8), 852-857, 2019
139262019
The transcriptome and proteome of the diatom Thalassiosira pseudonana reveal a diverse phosphorus stress response
ST Dyhrman, BD Jenkins, TA Rynearson, MA Saito, ML Mercier, ...
PloS one 7 (3), e33768, 2012
3352012
Probing the evolution, ecology and physiology of marine protists using transcriptomics
DA Caron, H Alexander, AE Allen, JM Archibald, EV Armbrust, C Bachy, ...
Nature Reviews Microbiology 15 (1), 6-20, 2017
1872017
Metatranscriptome analyses indicate resource partitioning between diatoms in the field
H Alexander, BD Jenkins, TA Rynearson, ST Dyhrman
Proceedings of the National Academy of Sciences 112 (17), E2182-E2190, 2015
1772015
Functional group-specific traits drive phytoplankton dynamics in the oligotrophic ocean
H Alexander, M Rouco, ST Haley, ST Wilson, DM Karl, ST Dyhrman
Proceedings of the National Academy of Sciences 112 (44), E5972-E5979, 2015
1322015
Virus-host relationships of marine single-celled eukaryotes resolved from metatranscriptomics
M Moniruzzaman, LL Wurch, H Alexander, ST Dyhrman, CJ Gobler, ...
Nature Communications 8 (1), 16054, 2017
992017
Re-assembly, quality evaluation, and annotation of 678 microbial eukaryotic reference transcriptomes
LK Johnson, H Alexander, CT Brown
Gigascience 8 (4), giy158, 2019
862019
Sixty years of Sverdrup: A retrospective of progress in the study of phytoplankton blooms
AD Fischer, EA Moberg, H Alexander, EF Brownlee, KR Hunter-Cevera, ...
Oceanography 27 (1), 222-235, 2014
572014
Integrating “big data” into aquatic ecology: Challenges and opportunities
JM Durden, JY Luo, H Alexander, AM Flanagan, L Grossmann
Limnology and Oceanography Bulletin 26 (4), 101-108, 2017
442017
Identifying reference genes with stable expression from high throughput sequence data
H Alexander, BD Jenkins, TA Rynearson, MA Saito, ML Mercier, ...
Frontiers in Microbiology 3, 31186, 2012
442012
Auxotrophic interactions: a stabilizing attribute of aquatic microbial communities?
WM Johnson, H Alexander, RL Bier, DR Miller, ME Muscarella, KJ Pitz, ...
FEMS Microbiology Ecology 96 (11), fiaa115, 2020
352020
Phosphorus availability regulates intracellular nucleotides in marine eukaryotic phytoplankton
EB Kujawinski, K Longnecker, H Alexander, ST Dyhrman, CL Fiore, ...
Limnology and Oceanography Letters 2 (4), 119-129, 2017
342017
Conserved transcriptional responses to nutrient stress in bloom-forming algae
MJ Harke, AR Juhl, ST Haley, H Alexander, ST Dyhrman
Frontiers in microbiology 8, 276783, 2017
302017
Shifting metabolic priorities among key protistan taxa within and below the euphotic zone
SK Hu, Z Liu, H Alexander, V Campbell, PE Connell, ST Dyhrman, ...
Environmental Microbiology 20 (8), 2865-2879, 2018
292018
Eukaryotic genomes from a global metagenomic data set illuminate trophic modes and biogeography of ocean plankton
H Alexander, SK Hu, AI Krinos, M Pachiadaki, BJ Tully, CJ Neely, T Reiter
mBio 14 (6), e01676-23, 2023
282023
Transcriptional response of the harmful raphidophyte Heterosigma akashiwo to nitrate and phosphate stress
ST Haley, H Alexander, AR Juhl, ST Dyhrman
Harmful Algae 68, 258-270, 2017
282017
Seasonal and geographical transitions in eukaryotic phytoplankton community structure in the Atlantic and Pacific Oceans
CJ Choi, V Jimenez, DM Needham, C Poirier, C Bachy, H Alexander, ...
Frontiers in Microbiology 11, 542372, 2020
242020
Transcriptional shifts highlight the role of nutrients in harmful brown tide dynamics
LL Wurch, H Alexander, KR Frischkorn, ST Haley, CJ Gobler, ST Dyhrman
Frontiers in Microbiology 10, 434545, 2019
242019
The osmolyte ties that bind: genomic insights into synthesis and breakdown of organic osmolytes in marine microbes
EL McParland, H Alexander, WM Johnson
Frontiers in Marine Science 8, 689306, 2021
192021
EUKulele: Taxonomic annotation of the unsung eukaryotic microbes
AI Krinos, SK Hu, NR Cohen, H Alexander
arXiv preprint arXiv:2011.00089, 2020
192020
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Articles 1–20