Jesse W. Breinholt
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Phylogenomics provides strong evidence for relationships of butterflies and moths
AY Kawahara, JW Breinholt
Proceedings of the Royal Society B 281 (1788), 1471-2954, 2014
A comprehensive and dated phylogenomic analysis of butterflies
M Espeland, J Breinholt, KR Willmott, AD Warren, R Vila, EFA Toussaint, ...
Current Biology 28 (5), 770-778. e5, 2018
The emergence of lobsters: phylogenetic relationships, morphological evolution and divergence time comparisons of an ancient group (Decapoda: Achelata, Astacidea, Glypheidea …
HD Bracken-Grissom, ST Ahyong, RD Wilkinson, RM Feldmann, ...
Systematic Biology 63 (4), 457-479, 2014
Phylogenomics reveals the evolutionary timing and pattern of butterflies and moths
AY Kawahara, D Plotkin, M Espeland, K Meusemann, EFA Toussaint, ...
Proceedings of the National Academy of Sciences 116 (45), 22657-22663, 2019
Phylotranscriptomics: saturated third codon positions radically influence the estimation of trees based on next-gen data
JW Breinholt, AY Kawahara
Genome Biology and Evolution 5 (11), 2082-2092, 2013
Resolving relationships among the megadiverse butterflies and moths with a novel pipeline for anchored phylogenomics
JW Breinholt, C Earl, AR Lemmon, EM Lemmon, L Xiao, AY Kawahara
Systematic Biology 67 (1), 78-93, 2018
Evidence for common horizontal transmission of Wolbachia among butterflies and moths
MZ Ahmed, JW Breinholt, AY Kawahara
BMC evolutionary biology 16 (1), 1-16, 2016
A phylogenomic framework, evolutionary timeline and genomic resources for comparative studies of decapod crustaceans
JM Wolfe, JW Breinholt, KA Crandall, AR Lemmon, EM Lemmon, LE Timm, ...
Proceedings of the Royal Society B 286 (1901), 20190079, 2019
A molecular phylogeny and revised higher‐level classification for the leaf‐mining moth family G racillariidae and its implications for larval host‐use evolution
AY Kawahara, D Plotkin, I Ohshima, C LOPEZ‐VAAMONDE, PR Houlihan, ...
Systematic Entomology 42 (1), 60-81, 2017
Underground evolution: new roots for the old tree of lumbricid earthworms
J Domínguez, M Aira, JW Breinholt, M Stojanovic, SW James, ...
Molecular phylogenetics and evolution 83, 7-19, 2015
Using phylogenetically-informed annotation (PIA) to search for light-interacting genes in transcriptomes from non-model organisms
DI Speiser, MS Pankey, AK Zaharoff, BA Battelle, HD Bracken-Grissom, ...
BMC bioinformatics 15 (1), 1-12, 2014
Moth tails divert bat attack: evolution of acoustic deflection
JR Barber, BC Leavell, AL Keener, JW Breinholt, BA Chadwell, ...
Proceedings of the National Academy of Sciences 112 (9), 2812-2816, 2015
The Global Invertebrate Genomics Alliance (GIGA): Developing community resources to study diverse invertebrate genomes
JV Lopez, H Bracken-Grissom, AG Collins, T Collins, K Crandall, D Distel, ...
Journal of Heredity 105, 2014
Population genetic structure of an endangered Utah endemic, Astragalus ampullarioides (Fabaceae)
JW Breinholt, R Van Buren, OR Kopp, CL Stephen
American Journal of Botany 96 (3), 661-667, 2009
Geographical structure and cryptic lineages within common green iguanas, Iguana iguana
CL Stephen, VH Reynoso, WS Collett, CR Hasbun, JW Breinholt
Journal of Biogeography 40 (1), 50-62, 2013
Taxonomic assessment of Lumbricidae (Oligochaeta) earthworm genera using DNA barcodes
M Pérez-Losada, R Bloch, JW Breinholt, M Pfenninger, J Domínguez
European Journal of Soil Biology 48, 41-47, 2012
Evolutionary hotspots in the Mojave Desert
AG Vandergast, RD Inman, KR Barr, KE Nussear, TC Esque, ...
Diversity 5 (2), 293-319, 2013
Anchored phylogenomics illuminates the skipper butterfly tree of life
EFA Toussaint, JW Breinholt, C Earl, AD Warren, AVZ Brower, M Yago, ...
BMC Evolutionary Biology 18 (1), 1-11, 2018
An Earthworm Riddle: Systematics and Phylogeography of the Spanish Lumbricid Postandrilus
M Perez-Losada, JW Breinholt, PG Porto, M Aira, J Dominguez
PLoS One 6 (11), e28153, 2011
The timing of the diversification of the freshwater crayfishes
Decapod crustacean phylogenetics, 355-368, 2016
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Articles 1–20