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Swati Parekh
Swati Parekh
Boehringer Ingelheim, Germany
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Year
Comparative analysis of single-cell RNA sequencing methods
C Ziegenhain, B Vieth, S Parekh, B Reinius, A Guillaumet-Adkins, ...
Molecular cell 65 (4), 631-643. e4, 2017
13772017
Evolutionary routes and KRAS dosage define pancreatic cancer phenotypes
S Mueller, T Engleitner, R Maresch, M Zukowska, S Lange, ...
Nature 554 (7690), 62-68, 2018
3692018
Benchmarking single-cell RNA-sequencing protocols for cell atlas projects
E Mereu, A Lafzi, C Moutinho, C Ziegenhain, DJ McCarthy, ...
Nature biotechnology 38 (6), 747-755, 2020
3332020
zUMIs-A fast and flexible pipeline to process RNA sequencing data with UMIs
S Parekh, C Ziegenhain, B Vieth, W Enard, I Hellmann
Gigascience 7 (6), giy059, 2018
3042018
Characterization of rare, dormant, and therapy-resistant cells in acute lymphoblastic leukemia
S Ebinger, EZ Özdemir, C Ziegenhain, S Tiedt, CC Alves, M Grunert, ...
Cancer cell 30 (6), 849-862, 2016
2652016
The impact of amplification on differential expression analyses by RNA-seq
S Parekh, C Ziegenhain, B Vieth, W Enard, I Hellmann
Scientific reports 6 (1), 25533, 2016
2532016
A systematic evaluation of single cell RNA-seq analysis pipelines
B Vieth, S Parekh, C Ziegenhain, W Enard, I Hellmann
Nature communications 10 (1), 4667, 2019
2482019
Sensitive and powerful single-cell RNA sequencing using mcSCRB-seq
JW Bagnoli, C Ziegenhain, A Janjic, LE Wange, B Vieth, S Parekh, ...
Nature communications 9 (1), 2937, 2018
2192018
powsimR: power analysis for bulk and single cell RNA-seq experiments
B Vieth, C Ziegenhain, S Parekh, W Enard, I Hellmann
Bioinformatics 33 (21), 3486-3488, 2017
1412017
Quantitative single-cell transcriptomics
C Ziegenhain, B Vieth, S Parekh, I Hellmann, W Enard
Briefings in functional genomics 17 (4), 220-232, 2018
572018
Chromatin remodeling due to degradation of citrate carrier impairs osteogenesis of aged mesenchymal stem cells
A Pouikli, S Parekh, M Maleszewska, C Nikopoulou, M Baghdadi, I Tripodi, ...
Nature Aging 1 (9), 810-825, 2021
362021
Ageing and sources of transcriptional heterogeneity
C Nikopoulou, S Parekh, P Tessarz
Biological chemistry 400 (7), 867-878, 2019
262019
mcSCRB-seq: sensitive and powerful single-cell RNA sequencing
JW Bagnoli, C Ziegenhain, A Janjic, LE Wange, B Vieth, S Parekh, ...
BioRxiv, 188367, 2017
92017
Histone N-terminal acetyltransferase NAA40 links one-carbon metabolism to chemoresistance
C Demetriadou, A Raoukka, E Charidemou, C Mylonas, C Michael, ...
Oncogene 41 (4), 571-585, 2022
82022
Hypoxia promotes osteogenesis by facilitating acetyl‐CoA‐mediated mitochondrial–nuclear communication
A Pouikli, M Maleszewska, S Parekh, M Yang, C Nikopoulou, JJ Bonfiglio, ...
The EMBO Journal 41 (23), e111239, 2022
42022
RNA-sequencing of single cholangiocyte-derived organoids reveals high organoid-to organoid variability
K Gehling, S Parekh, F Schneider, M Kirchner, V Kondylis, C Nikopoulou, ...
Life Science Alliance 5 (12), 2022
42022
Strategies for quantitative RNA-seq analyses among closely related species
S Parekh, B Vieth, C Ziegenhain, W Enard, I Hellmann
bioRxiv, 297408, 2018
42018
Deregulated mito-nuclear communication alters chromatin plasticity and differentiation potential of mesenchymal stem cells upon ageing
A Pouikli, S Parekh, M Maleszewska, M Baghdadi, I Tripodi, C Nikopoulou, ...
bioRxiv, 2020.04. 02.022293, 2020
32020
Spatial and single-cell profiling of the metabolome, transcriptome and epigenome of the aging mouse liver
C Nikopoulou, N Kleinenkuhnen, S Parekh, T Sandoval, C Ziegenhain, ...
Nature aging 3 (11), 1430-1445, 2023
22023
Single-cell resolution unravels spatial alterations in metabolism, transcriptome and epigenome of ageing liver
C Nikopoulou, N Kleinenkuhnen, S Parekh, T Sandoval, F Schneider, ...
bioRxiv, 2021.12. 14.472593, 2021
22021
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