| Ethnic nationalism and separatism in West Papua, Indonesia JCI Trajano Journal of Peace, Conflict and Development 16, 12-35, 2010 | 45 | 2010 |
| Bottom-up peacebuilding: Role of grassroots and local actors in the Mindanao peace process JCI Trajano Asian Journal of Peacebuilding, 2020 | 13 | 2020 |
| A policy analysis of nuclear safety culture and security culture in East Asia: Examining best practices and challenges JCI Trajano Nuclear Engineering and Technology 51 (6), 1696-1707, 2019 | 13 | 2019 |
| The sustainability of nuclear energy in Southeast Asia: Opportunities and challenges M Caballero-Anthony, ADB Cook, JCI Trajano, M Sembiring S. Rajaratnam School of International Studies., 2014 | 12 | 2014 |
| The state of nuclear energy in ASEAN: regional norms and challenges M Caballero-Anthony, JCI Trajano Asian Perspective 39 (4), 695-723, 2015 | 10 | 2015 |
| The Future of Nuclear Security in the Asia-Pacific: Expanding the Role of Southeast Asia JC Trajano, M Caballero-Anthony International Journal of Nuclear Security 6 (2), 2020 | 9 | 2020 |
| COMBATTING HUMAN TRAFFICKING IN EAST ASIA: MIND THE GAPS JC Trajano NTS Insight, 5, 2018 | 9* | 2018 |
| Building Resilience from Within: Enhancing Humanitarian Civil-Military Coordination in Post-Haiyan Philippines JCI Trajano NTS Report No. 6, 2016 | 9 | 2016 |
| Japan-Philippines Strategic Partnership: Converging Threat Perceptions JC Trajano RSIS Commentaries, 2013 | 9 | 2013 |
| Marine environmental protection in the South China Sea: Challenges and prospects part 2 JC Trajano, L Gong, M Sembiring, R Astuti S. Rajaratnam School of International Studies, 2018 | 8 | 2018 |
| Japan and the Philippines unite against China JCI Trajano East Asia Forum 21, 2013 | 8 | 2013 |
| Tackling East Asia's New Environmental Challenge Marine Plastic Pollution L Gong, JC Trajano S. Rajaratnam School of International Studies, 2019 | 7 | 2019 |
| Resource Sharing and Joint Development in the South China Sea: Exploring Avenues of Cooperation JC Trajano S. Rajaratnam School of International Studies, 2019 | 7 | 2019 |
| Indonesia and the Philippines: Political dynasties in democratic states JCI Trajano, YC Kenawas RSIS Commentaries, 2013 | 7 | 2013 |
| Advancing marine environmental protection in the South China Sea L Gong, JC Trajano S. Rajaratnam School of International Studies, 2018 | 6 | 2018 |
| Enhancing nuclear energy cooperation in ASEAN: Regional norms and challenges M Caballero-Anthony, JCI Trajano Learning from Fukushima: Nuclear power in East Asia 44, 187, 2017 | 5 | 2017 |
| Achieving the ASEAN Economic Community: Are the Philippines and Indonesia Ready for 2015? JC Trajano RSIS Commentaries, 2013 | 5 | 2013 |
| Japan-Philippines Relations: New Dynamics in Strategic Partnership JC Trajano RSIS Commentaries, 2013 | 5 | 2013 |
| Examining Southeast Asia’s diplomacy on nuclear disarmament and nuclear security: shared norms and a regional agenda M Caballero-Anthony, JC Trajano Asian Journal of Peacebuilding, 2022 | 4 | 2022 |
| A Rights-Based Approach to Governing Online Freelance Labour: Towards Decent Work in Digital Labour Platforms JC Trajano S Rajaratnam School of International Studies, 2021 | 4 | 2021 |
