| Identification of Clostridioides difficile-inhibiting gut commensals using culturomics, phenotyping, and combinatorial community assembly S Ghimire, C Roy, S Wongkuna, L Antony, A Maji, MC Keena, A Foley, ... Msystems 5 (1), 10.1128/msystems. 00620-19, 2020 | 49 | 2020 |
| Autophagy controls mucus secretion from intestinal goblet cells by alleviating ER stress M Naama, S Telpaz, A Awad, S Ben-Simon, S Harshuk-Shabso, ... Cell host & microbe 31 (3), 433-446. e4, 2023 | 42 | 2023 |
| Gut microbial dynamics during conventionalization of germfree chicken M Thomas, S Wongkuna, S Ghimire, R Kumar, L Antony, KC Doerner, ... Msphere 4 (2), 10.1128/msphere. 00035-19, 2019 | 29 | 2019 |
| Frontiers in antibiotic alternatives for Clostridioides difficile infection M Phanchana, P Harnvoravongchai, S Wongkuna, T Phetruen, ... World Journal of Gastroenterology 27 (42), 7210, 2021 | 10 | 2021 |
| Description of a new member of the family Erysipelotrichaceae: Dakotella fusiforme gen. nov., sp. nov., isolated from healthy human feces S Ghimire, S Wongkuna, J Scaria PeerJ 8, e10071, 2020 | 6 | 2020 |
| Rice bran and quercetin produce a positive synergistic effect on human gut microbiota, elevate the level of propionate, and reduce the population of enterobacteriaceae family … S Ghimire, S Wongkuna, R Sankaranarayanan, EP Ryan, GJ Bhat, ... bioRxiv, 2020.02. 13.947515, 2020 | 6 | 2020 |
| Taxono-genomics description of Olsenella lakotia SW165 T sp. nov., a new anaerobic bacterium isolated from cecum of feral chicken S Wongkuna, S Ghimire, T Janvilisri, K Doerner, ... F1000Research 9, 2020 | 6 | 2020 |
| Sellimonas caecigallum sp. nov., description and genome sequence of a new member of the Sellimonas genus isolated from the cecum of feral chicken S Wongkuna, S Ghimire, L Antony, S Chankhamhaengdecha, T Janvilisri, ... New Microbes and New Infections 33, 100626, 2020 | 6 | 2020 |
| Gut microbial dynamics during conventionalization of germfree chicken. mSphere 4: e00035-19 M Thomas, S Wongkuna, S Ghimire, R Kumar, L Antony, KC Doerner, ... | 6 | 2019 |
| Temporal Variations in Patterns of Clostridioides difficile Strain Diversity and Antibiotic Resistance in Thailand S Wongkuna, T Janvilisri, M Phanchana, P Harnvoravongchai, ... Antibiotics 10 (6), 714, 2021 | 5 | 2021 |
| Genome sequence and description of Blautia brookingsii SG772 sp. nov., a novel bacterial species isolated from human faeces S Ghimire, S Wongkuna, R Kumar, E Nelson, J Christopher-Hennings, ... New Microbes and New Infections 34, 100648, 2020 | 5 | 2020 |
| Mediterraneibacter catenae SW178 sp. nov., an intestinal bacterium of feral chicken S Wongkuna, S Ghimire, S Chankhamhaengdecha, T Janvilisri, J Scaria PeerJ 9, e11050, 2021 | 3 | 2021 |
| Identification of a microbial sub-community from the feral chicken gut that reduces Salmonella colonization and improves gut health in a gnotobiotic chicken model S Wongkuna, A Ambat, S Ghimire, SP Mattiello, A Maji, R Kumar, ... Microbiology Spectrum, e01621-23, 2024 | 2 | 2024 |
| Positive Synergistic Effects of Quercetin and Rice Bran on Human Gut Microbiota Reduces Enterobacteriaceae Family Abundance and Elevates Propionate in a … S Ghimire, S Wongkuna, R Sankaranarayanan, EP Ryan, GJ Bhat, ... Frontiers in Microbiology 12, 751225, 2021 | 2 | 2021 |
| Description of Collinsella avium sp. nov., a new member of the Collinsella genus isolated from the ceacum of feral chicken S Wongkuna, S Ghimire, S Chankhamhaengdecha, T Janvilisri, J Scaria New Microbes and New Infections 42, 100902, 2021 | 2 | 2021 |
| Description of a new member of the family Erysipelotrichaceae: Clostridium fusiformis sp. nov., isolated from healthy human feces S Ghimire, S Wongkuna, J Scaria bioRxiv, 734715, 2019 | 2 | 2019 |
| A history of repeated antibiotic usage leads to microbiota-dependent mucus defects KL Krigul, RH Feeney, S Wongkuna, O Aasmets, SM Holmberg, ... bioRxiv, 2024.03. 07.583875, 2024 | 1 | 2024 |
| Olsenella lakotia SW165 sp. nov., an acetate producing obligate anaerobe with a GC rich genome S Wongkuna, S Ghimire, R Kumar, L Antony, S Chankhamhaengdecha, ... bioRxiv, 670927, 2019 | 1 | 2019 |
| The gut commensal Blautia maintains colonic mucus function under low-fiber consumption through secretion of short-chain fatty acids SM Holmberg, RH Feeney, V Prasoodanan PK, F Puértolas-Balint, ... Nature Communications 15 (1), 3502, 2024 | | 2024 |
| Sudeep Ghimire1, 2, Supapit Wongkuna1, 2, Ranjini Sankaranarayanan3, Elizabeth P. Ryan4, G. Jayarama Bhat3 and Joy Scaria1, 2 V Chaudhry, A Banerjee, U Sood, J Scaria, S Ghimire, S Wongkuna, ... Multi-omics Profiling of Unique Niches to Reveal the Microbial and …, 2022 | | 2022 |
Sudeep GhimireDepartment of Pathology, University of Iowa, Iowa City, IAVerified email at uiowa.edu
