| Metagenomic characterization of the effect of feed additives on the gut microbiome and antibiotic resistome of feedlot cattle M Thomas, M Webb, S Ghimire, A Blair, K Olson, GJ Fenske, AT Fonder, ... Scientific reports 7 (1), 12257, 2017 | 140 | 2017 |
| Whole genome sequencing-based detection of antimicrobial resistance and virulence in non-typhoidal Salmonella enterica isolated from wildlife M Thomas, GJ Fenske, L Antony, S Ghimire, R Welsh, A Ramachandran, ... Gut pathogens 9, 1-9, 2017 | 60 | 2017 |
| Identification of Clostridioides difficile-inhibiting gut commensals using culturomics, phenotyping, and combinatorial community assembly S Ghimire, C Roy, S Wongkuna, L Antony, A Maji, MC Keena, A Foley, ... Msystems 5 (1), 10.1128/msystems. 00620-19, 2020 | 49 | 2020 |
| Gut microbial dynamics during conventionalization of germfree chicken M Thomas, S Wongkuna, S Ghimire, R Kumar, L Antony, KC Doerner, ... Msphere 4 (2), 10.1128/msphere. 00035-19, 2019 | 29 | 2019 |
| Integration of culture-dependent and independent methods provides a more coherent picture of the pig gut microbiome GJ Fenske, S Ghimire, A L, J Christopher-Hennings, S Joy FEMS Microbiology Ecology, https://doi.org/10.1093/femsec/fiaa022, 2020 | 28 | 2020 |
| Obesity induced gut dysbiosis contribute to disease severity in the animal model of multiple sclerosis SK Shahi, S Ghimire, P Lehman, AK Mangalam Frontiers in Immunology, 4874, 2022 | 22 | 2022 |
| Dietary Isoflavones Alter Gut Microbiota and Lipopolysaccharide Biosynthesis to Reduce Inflammation S Ghimire, NM Cady, P Lehman, SR Peterson, SK Shahi, F Rashid, S Giri, ... Gut Microbes 14 (1), 2127446, 2022 | 14 | 2022 |
| Low-dose glyphosate exposure alters gut microbiota composition and modulates gut homeostasis PC Lehman, N Cady, S Ghimire, SK Shahi, RL Shrode, HJ Lehmler, ... Environmental toxicology and pharmacology 100, 104149, 2023 | 10 | 2023 |
| Curtobacterium allii sp. nov., the actinobacterial pathogen causing onion bulb rot M Khanal, BP Bhatta, S Timilsina, S Ghimire, K Cochran, S Malla Antonie Van Leeuwenhoek 116 (2), 83-96, 2023 | 10 | 2023 |
| Description of a new member of the family Erysipelotrichaceae: Dakotella fusiforme gen. nov., sp. nov., isolated from healthy human feces S Ghimire, S Wongkuna, J Scaria PeerJ 8, e10071, 2020 | 6 | 2020 |
| Rice bran and quercetin produce a positive synergistic effect on human gut microbiota, elevate the level of propionate, and reduce the population of enterobacteriaceae family … S Ghimire, S Wongkuna, R Sankaranarayanan, EP Ryan, GJ Bhat, ... bioRxiv, 2020.02. 13.947515, 2020 | 6 | 2020 |
| Taxono-genomics description of Olsenella lakotia SW165 T sp. nov., a new anaerobic bacterium isolated from cecum of feral chicken S Wongkuna, S Ghimire, T Janvilisri, K Doerner, ... F1000Research 9, 2020 | 6 | 2020 |
| Sellimonas caecigallum sp. nov., description and genome sequence of a new member of the Sellimonas genus isolated from the cecum of feral chicken S Wongkuna, S Ghimire, L Antony, S Chankhamhaengdecha, T Janvilisri, ... New Microbes and New Infections 33, 100626, 2020 | 6 | 2020 |
| Gut microbial dynamics during conventionalization of germfree chicken. mSphere 4: e00035-19 M Thomas, S Wongkuna, S Ghimire, R Kumar, L Antony, KC Doerner, ... | 6 | 2019 |
| Prevalence of vancomycin resistant Enterococci species in minced buffalo meat of chitwan, Nepal S Ghimire, HB Basnet, LR Joshi, M Sapkota International Journal of Applied Sciences and Biotechnology 2 (4), 409-412, 2014 | 6 | 2014 |
| Genome sequence and description of Blautia brookingsii SG772 sp. nov., a novel bacterial species isolated from human faeces S Ghimire, S Wongkuna, R Kumar, E Nelson, J Christopher-Hennings, ... New Microbes and New Infections 34, 100648, 2020 | 5 | 2020 |
| Role of the gut microbiome in multiple sclerosis: From etiology to therapeutics SK Shahi, M Yadav, S Ghimire, AK Mangalam International review of neurobiology 167, 185-215, 2022 | 4 | 2022 |
| A model screening pipeline for bile acid converting anti-Clostridioides difficile bacteria reveals unique biotherapeutic potential of Peptacetobacter hiranonis AA Vinithakumari, BG Hernandez, S Ghimire, S Adams, C Stokes, ... bioRxiv, 2021 | 3 | 2021 |
| Mediterraneibacter catenae SW178 sp. nov., an intestinal bacterium of feral chicken S Wongkuna, S Ghimire, S Chankhamhaengdecha, T Janvilisri, J Scaria PeerJ 9, e11050, 2021 | 3 | 2021 |
| Identification of a microbial sub-community from the feral chicken gut that reduces Salmonella colonization and improves gut health in a gnotobiotic chicken model S Wongkuna, A Ambat, S Ghimire, SP Mattiello, A Maji, R Kumar, ... Microbiology Spectrum, e01621-23, 2024 | 2 | 2024 |
Joy ScariaOklahoma State UniversityVerified email at okstate.edu
