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Zasha Weinberg
Zasha Weinberg
Verified email at bioinf.uni-leipzig.de - Homepage
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Cited by
Cited by
Year
Macronuclear Genome Sequence of the Ciliate Tetrahymena thermophila, a Model Eukaryote
JA Eisen, RS Coyne, M Wu, D Wu, M Thiagarajan, JR Wortman, ...
PLoS biology 4 (9), e286, 2006
8702006
Riboswitches in eubacteria sense the second messenger cyclic di-GMP
N Sudarsan, ER Lee, Z Weinberg, RH Moy, JN Kim, KH Link, RR Breaker
Science 321 (5887), 411-413, 2008
8602008
A glycine-dependent riboswitch that uses cooperative binding to control gene expression
M Mandal, M Lee, JE Barrick, Z Weinberg, GM Emilsson, WL Ruzzo, ...
Science 306 (5694), 275-279, 2004
6382004
Rfam 14: expanded coverage of metagenomic, viral and microRNA families
I Kalvari, EP Nawrocki, N Ontiveros-Palacios, J Argasinska, K Lamkiewicz, ...
Nucleic Acids Research 49 (D1), D192-D200, 2021
5302021
Widespread genetic switches and toxicity resistance proteins for fluoride
JL Baker, N Sudarsan, Z Weinberg, A Roth, RB Stockbridge, RR Breaker
Science 335 (6065), 233-235, 2012
4762012
Comparative genomics reveals 104 candidate structured RNAs from bacteria, archaea, and their metagenomes
Z Weinberg, JX Wang, J Bogue, J Yang, K Corbino, RH Moy, RR Breaker
Genome biology 11, 1-17, 2010
4342010
An allosteric self-splicing ribozyme triggered by a bacterial second messenger
ER Lee, JL Baker, Z Weinberg, N Sudarsan, RR Breaker
science 329 (5993), 845-848, 2010
4292010
CMfinder—a covariance model based RNA motif finding algorithm
Z Yao, Z Weinberg, WL Ruzzo
Bioinformatics 22 (4), 445-452, 2006
4252006
Identification of 22 candidate structured RNAs in bacteria using the CMfinder comparative genomics pipeline
Z Weinberg, JE Barrick, Z Yao, A Roth, JN Kim, J Gore, JX Wang, ER Lee, ...
Nucleic acids research 35 (14), 4809-4819, 2007
3962007
6S RNA is a widespread regulator of eubacterial RNA polymerase that resembles an open promoter
JE Barrick, N Sudarsan, Z Weinberg, WL Ruzzo, RR Breaker
Rna 11 (5), 774-784, 2005
3022005
Riboswitches in eubacteria sense the second messenger c-di-AMP
JW Nelson, N Sudarsan, K Furukawa, Z Weinberg, JX Wang, RR Breaker
Nature chemical biology 9 (12), 834-839, 2013
2932013
A widespread self-cleaving ribozyme class is revealed by bioinformatics
A Roth, Z Weinberg, AGY Chen, PB Kim, TD Ames, RR Breaker
Nature chemical biology 10 (1), 56-60, 2014
2752014
R2R-software to speed the depiction of aesthetic consensus RNA secondary structures
Z Weinberg, RR Breaker
BMC bioinformatics 12, 1-9, 2011
2582011
New classes of self-cleaving ribozymes revealed by comparative genomics analysis
Z Weinberg, PB Kim, TH Chen, S Li, KA Harris, CE Lünse, RR Breaker
Nature chemical biology 11 (8), 606-610, 2015
2062015
A widespread riboswitch candidate that controls bacterial genes involved in molybdenum cofactor and tungsten cofactor metabolism
EE Regulski, RH Moy, Z Weinberg, JE Barrick, Z Yao, WL Ruzzo, ...
Molecular microbiology 68 (4), 918-932, 2008
1822008
Identification of hammerhead ribozymes in all domains of life reveals novel structural variations
J Perreault, Z Weinberg, A Roth, O Popescu, P Chartrand, G Ferbeyre, ...
PLoS computational biology 7 (5), e1002031, 2011
1772011
Bacterial riboswitches cooperatively bind Ni2+ or Co2+ ions and control expression of heavy metal transporters
K Furukawa, A Ramesh, Z Zhou, Z Weinberg, T Vallery, WC Winkler, ...
Molecular cell 57 (6), 1088-1098, 2015
1712015
RNAcentral 2021: secondary structure integration, improved sequence search and new member databases
Nucleic acids research 49 (D1), D212-D220, 2021
1692021
Fluoride resistance and transport by riboswitch-controlled CLC antiporters
RB Stockbridge, HH Lim, R Otten, C Williams, T Shane, Z Weinberg, ...
Proceedings of the National Academy of Sciences 109 (38), 15289-15294, 2012
1592012
Small, highly active DNAs that hydrolyze DNA
H Gu, K Furukawa, Z Weinberg, DF Berenson, RR Breaker
Journal of the American Chemical Society 135 (24), 9121-9129, 2013
1542013
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