Cotinine reduces amyloid-β aggregation and improves memory in Alzheimer's disease mice V Echeverria, R Zeitlin, S Burgess, S Patel, A Barman, G Thakur, ... Journal of Alzheimer's disease 24 (4), 817-835, 2011 | 96 | 2011 |
Dimerization of the full-length Alzheimer amyloid β-peptide (Aβ42) in explicit aqueous solution: A molecular dynamics study X Zhu, RP Bora, A Barman, R Singh, R Prabhakar The Journal of Physical Chemistry B 116 (15), 4405-4416, 2012 | 65 | 2012 |
Hydrocarbons Depending on the Chain Length and Head Group Adopt Different Conformations within a Water-Soluble Nanocapsule: 1H NMR and Molecular … R Choudhury, A Barman, R Prabhakar, V Ramamurthy The Journal of Physical Chemistry B 117 (1), 398-407, 2013 | 58 | 2013 |
Computational modeling of substrate specificity and catalysis of the β-secretase (BACE1) enzyme A Barman, S Schürer, R Prabhakar Biochemistry 50 (20), 4337-4349, 2011 | 58 | 2011 |
Comparative molecular dynamics simulation studies for determining factors contributing to the thermostability of chemotaxis protein “CheY” M Paul, M Hazra, A Barman, S Hazra Journal of Biomolecular Structure and Dynamics 32 (6), 928-949, 2014 | 48 | 2014 |
Elucidating the catalytic mechanism of β-secretase (BACE1): A quantum mechanics/molecular mechanics (QM/MM) approach A Barman, R Prabhakar Journal of Molecular Graphics and Modelling 40, 1-9, 2013 | 40 | 2013 |
Theoretical insights into the functioning of metallopeptidases and their synthetic analogues T Zhang, M Ozbil, A Barman, TJ Paul, RP Bora, R Prabhakar Accounts of chemical research 48 (2), 192-200, 2015 | 39 | 2015 |
Computational insights into aspartyl protease activity of presenilin 1 (ps1) generating alzheimer amyloid β-peptides (aβ40 and aβ42) R Singh, A Barman, R Prabhakar The Journal of Physical Chemistry B 113 (10), 2990-2999, 2009 | 39 | 2009 |
Protonation states of the catalytic dyad of β-secretase (BACE1) in the presence of chemically diverse inhibitors: a molecular docking study A Barman, R Prabhakar Journal of chemical information and modeling 52 (5), 1275-1287, 2012 | 38 | 2012 |
Loss of cleavage at β′-site contributes to apparent increase in β-amyloid peptide (Aβ) secretion by β-secretase (BACE1)-glycosylphosphatidylinositol (GPI) processing of … KS Vetrivel, A Barman, Y Chen, PD Nguyen, SL Wagner, R Prabhakar, ... Journal of Biological Chemistry 286 (29), 26166-26177, 2011 | 35 | 2011 |
Cysteine-mediated dynamic hydrogen-bonding network in the active site of Pin1 A Barman, D Hamelberg Biochemistry 53 (23), 3839-3850, 2014 | 30 | 2014 |
Mechanism of peptide hydrolysis by co-catalytic metal centers containing leucine aminopeptidase enzyme: a DFT approach X Zhu, A Barman, M Ozbil, T Zhang, S Li, R Prabhakar JBIC Journal of Biological Inorganic Chemistry 17, 209-222, 2012 | 30 | 2012 |
Which one among aspartyl protease, metallopeptidase, and artificial metallopeptidase is the most efficient catalyst in peptide hydrolysis? RP Bora, A Barman, X Zhu, M Ozbil, R Prabhakar The Journal of Physical Chemistry B 114 (33), 10860-10875, 2010 | 30 | 2010 |
Coupled dynamics and entropic contribution to the allosteric mechanism of Pin1 A Barman, D Hamelberg The journal of physical chemistry B 120 (33), 8405-8415, 2016 | 27 | 2016 |
An iron reservoir to the catalytic metal: the rubredoxin iron in an extradiol dioxygenase F Liu, J Geng, RH Gumpper, A Barman, I Davis, A Ozarowski, ... Journal of Biological Chemistry 290 (25), 15621-15634, 2015 | 22 | 2015 |
Computational perspective and evaluation of plausible catalytic mechanisms of peptidyl-prolyl cis–trans isomerases ST Ladani, MG Souffrant, A Barman, D Hamelberg Biochimica et Biophysica Acta (BBA)-General Subjects 1850 (10), 1994-2004, 2015 | 20 | 2015 |
Mechanisms of peptide hydrolysis by aspartyl and metalloproteases TJ Paul, A Barman, M Ozbil, RP Bora, T Zhang, G Sharma, Z Hoffmann, ... Physical Chemistry Chemical Physics 18 (36), 24790-24801, 2016 | 19 | 2016 |
Insights into the mechanism of methionine oxidation catalyzed by metal (Cu2+, Zn2+, and Fe3+)—Amyloid beta (Aβ) peptide complexes: A computational study A Barman, W Taves, R Prabhakar Journal of computational chemistry 30 (9), 1405-1413, 2009 | 19 | 2009 |
Computational Insights into Substrate and Site Specificities, Catalytic Mechanism, and Protonation States of the Catalytic Asp Dyad of β-Secretase A Barman, R Prabhakar Scientifica 2014, 2014 | 18 | 2014 |
Fe (II)/Fe (III) redox process can significantly modulate the conformational dynamics and electrostatics of Pirin in NF-κB regulation A Barman, D Hamelberg ACS omega 1 (5), 837-842, 2016 | 16 | 2016 |