Lin Li
Lin Li
Assistant Professor, Department of Physics, University of Texas at El Paso
Verified email at - Homepage
Cited by
Cited by
On the Dielectric “Constant” of Proteins: Smooth Dielectric Function for Macromolecular Modeling and Its Implementation in DelPhi
L Li, C Li, Z Zhang, E Alexov
Journal of chemical theory and computation 9 (4), 2126-2136, 2013
DelPhi: a comprehensive suite for DelPhi software and associated resources
L Li, C Li, S Sarkar, J Zhang, S Witham, Z Zhang, L Wang, N Smith, ...
BMC biophysics 5 (1), 9, 2012
Community-wide assessment of protein-interface modeling suggests improvements to design methodology
SJ Fleishman, TA Whitehead, EM Strauch, JE Corn, S Qin, HX Zhou, ...
Journal of molecular biology 414 (2), 289-302, 2011
Structural and physico-chemical effects of disease and non-disease nsSNPs on proteins
TG Kucukkal, M Petukh, L Li, E Alexov
Current opinion in structural biology 32, 18-24, 2015
pKa predictions for proteins, RNAs, and DNAs with the Gaussian dielectric function using DelPhi pKa
L Wang, L Li, E Alexov
Proteins: Structure, Function, and Bioinformatics 83 (12), 2186-2197, 2015
A novel protocol for three-dimensional structure prediction of RNA-protein complexes
Y Huang, S Liu, D Guo, L Li, Y Xiao
Scientific reports 3, 2013
DelPhi web server v2: incorporating atomic-style geometrical figures into the computational protocol
N Smith, S Witham, S Sarkar, J Zhang, L Li, C Li, E Alexov
Bioinformatics 28 (12), 1655-1657, 2012
Highly efficient and exact method for parallelization of grid‐based algorithms and its implementation in DelPhi
C Li, L Li, J Zhang, E Alexov
Journal of Computational Chemistry 33 (24), 1960-1966, 2012
ASPDock: protein-protein docking algorithm using atomic solvation parameters model
L Li, D Guo, Y Huang, S Liu, Y Xiao
BMC bioinformatics 12 (1), 36, 2011
Predicting protein-DNA binding free energy change upon missense mutations using modified MM/PBSA approach: SAMPDI webserver
Y Peng, L Sun, Z Jia, L Li, E Alexov
Bioinformatics, 2017
On the modeling of polar component of solvation energy using smooth Gaussian-based dielectric function
L Li, C Li, E Alexov
J. Theor. Comput. Chem, 2014
Forces and Disease: Electrostatic force differences caused by mutations in kinesin motor domains can distinguish between disease-causing and non-disease-causing mutations
L Li, Z Jia, Y Peng, S Godar, I Getov, S Teng, J Alper, E Alexov
Scientific Reports 7 (1), 8237, 2017
Progress in developing Poisson-Boltzmann equation solvers
C Li, L Li, M Petukh, E Alexov
Molecular based mathematical biology 1, 42-62, 2013
Predicting nonspecific ion binding using DelPhi
M Petukh, M Zhenirovskyy, C Li, L Li, L Wang, E Alexov
Biophysical Journal 102 (12), 2885-2893, 2012
DelPhiForce, a tool for electrostatic force calculations: Applications to macromolecular binding
L Li, A Chakravorty, E Alexov
Journal of Computational Chemistry 38 (9), 584-593, 2017
On the energy components governing molecular recognition in the framework of continuum approaches
L Li, L Wang, E Alexov
Frontiers in molecular biosciences 2, 2015
Cytoplasmic dynein binding, run length, and velocity are guided by long-range electrostatic interactions
L Li, J Alper, E Alexov
Scientific Reports 6, 31523, 2016
Continuous development of schemes for parallel computing of the electrostatics in biological systems: Implementation in DelPhi
C Li, M Petukh, L Li, E Alexov
Journal of computational chemistry 34 (22), 1949-1960, 2013
DelPhi Suite: New Developments and Review of Functionalities
C Li, Z Jia, A Chakravorty, S Pahari, Y Peng, S Basu, M Koirala, ...
Journal of Computational Chemistry, 2019
DelPhiForce web server: electrostatic forces and energy calculations and visualization
L Li, Z Jia, Y Peng, A Chakravorty, L Sun, E Alexov
Bioinformatics 33 (22), 3661-3663, 2017
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